Genome-Wide Association Study SNPs in the Human Genome Diversity Project Populations: Does Selection Affect Unlinked SNPs with Shared Trait Associations?

..., or iHS measure in the individual SNP, group unsigned, or group signed analysis of all 1,336 GWAS SNPs. Full Set of 1,336 GWAS SNPs Individual SNPs SNP Trait(s) Measure(s) rs28777 Black vs. Blond Hair; Black vs. Red Hair DEuropeCA; FEurasia rs1834640 Skin Pigmentation iME rs12913832 Black vs. Blond Hair; Black vs. Red Hair FEurasia Unsigned Study Group Study * Trait(s) Measure(s) Han Black vs. Blond Hair DEuropeME; DEuropeCA; FEurope; FEurasia; LEurasiaLat Han Black vs. Red Hair DEuropeME

... Individual SNPs SNP Trait(s) Measure(s) rs28777 Black vs. Blond Hair; Black vs. Red Hair DEuropeME; DEuropeCA; FEurasia rs12913832 Black vs. Blond Hair; Black vs. Red Hair FEurasia; LEurasiaLat rs10484554 AIDS Progression; Psoriasis FAA Unsigned Study Group Study * Trait(s) Measure(s) Han Black vs. Blond Hair DEuropeME; DEuropeCA; FEurope; FEurasia; LEurasiaLat Han Black vs. Red Hair DEuropeME; DEuropeCA; DEuropeEA; FEurope; FEurasia; FWorld Sulem(2) Blue vs. Green Eyes LEurasiaLat Sulem(2) Blond vs

... analysis, three SNPs were significant for one or more delta, F st , LLC, or iHS measure. These three - rs28777, rs1834640, and rs12913832 were all associated with pigmentation traits in GWAS (see Table 3 for a complete list of SNPs with significant p-values). A total of 8 groups reached significance for at least one measure in the unsigned group analysis while 10 reached significance in the signed group analysis. Included among these 10 were 3 pigmentation study groups that were significant in both

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SNP: rs28777

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